PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00065792001
Common NameGSBRNA2T00065792001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 404aa    MW: 44256.6 Da    PI: 6.4602
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00065792001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.75.4e-33219273155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+ mkv+gLt++hvkSHLQkYR+
  GSBRNA2T00065792001 219 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKKMKVEGLTIYHVKSHLQKYRT 273
                          68****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.2216276IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-30218275IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-24219273IPR006447Myb domain, plants
SuperFamilySSF466891.74E-16219273IPR009057Homeodomain-like
PfamPF002491.1E-9221272IPR001005SANT/Myb domain
PfamPF143792.8E-24305350IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MEARPVQRSG SREISNLTRT SSIPSSSENN NNNTQFMSKP LGGQNYHLLA SSNGGAVGHI  60
CSSSSSGFST NLHYSSMEKH YAGSSSNAAA AAAASRDDSS WCSDSLHGGF LDFPENHHHA  120
SQIEDGGGIG AAFDDVQKRN DWHEWADHLI TDEDPLLSTN WNDILLETSS NSDSKDQKTL  180
QDQPQQPQIV QQQQPSPSVS VELRPVSTTS SNSNNGNGKA RMRWTPELHE AFVEAVNSLG  240
GSERATPKGV LKKMKVEGLT IYHVKSHLQK YRTARYRPEP SETGSSEKKL TPLEHITSLD  300
LKGGMGITEA LRLQMEVQKQ LHEQLEIQRN LQLRIEEQGK YLQMMFEKQN SGLGKGTAST  360
SDSPSKSEQE DKKIADSKDL TAEGTGKCKE PESPQPKRPK TDN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.200410.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00065792001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8061560.0JN806156.1 Brassica napus PHR1 (PHR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596780.10.0PREDICTED: protein PHR1-LIKE 1 isoform X1
SwissprotQ8GUN52e-73PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A078HL260.0A0A078HL26_BRANA; BnaC01g09850D protein
STRINGBra010355.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85627117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.10.0phosphate starvation response 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]